Discrepancies in "Coverage Depth"

The coverage depth may be inconsistent between the Coverage Report and the Alignment View. In the Coverage Report, the “Depth” column may not match the depth of coverage seen in the lower portion of the Alignment View. For instance, the Coverage Report may show a depth of “3” for a particular range even though you can see 5 or more sequences in the same range of the Alignment View. The apparent discrepancy occurs because the Coverage Report shows the minimum depth of coverage for a location, while the Alignment View shows all sequences that contribute to the coverage.