Sample SeqMan Script for Windows

Note that when writing an actual script, each command and its parameters should be written all on one line.

newProject

assemble

file:"C:\Program Files\DNASTAR\DemoSeqMan"

          expandDir:true

          optimizeOrder:true

          contamScan:false

          vectScan:true

          trimEnds:true

          doAssemble:true

exportContigs

          contigs:where {length>=300}

          file:"C:\Datafolder\Contigs-over-300.gbk"

          format:Genbank

          doGaps:false

          doFeature:true

exportSequences

          contigs:{1 2 3}

          file:"C:\Datafolder\Contig1-3Seqs.fas"

          format: FAS

          doGaps:true

saveProject

file:"C:\Datafolder\Myproject.sqd"