MegAlign Pro supports the following multiple sequence alignment methods: Clustal Omega, Clustal W, MAFFT, MUSCLE and Mauve. Click here for descriptions and a comparison of the different methods.

To learn how to perform, modify, and troubleshoot multiple sequence alignments, see the following topics:


Multiple sequence alignment tutorials:

The following tutorials all use free data that can be downloaded from the DNASTAR website.


The following video is a quick introduction to performing multiple alignments in MegAlign Pro:

Need more help with this?
Contact DNASTAR

Thanks for your feedback.