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User Guide to GeneQuest — 18.0
18.0
Table of Contents
Home Page
User Guide to GeneQuest — 18.0
User Guide to GeneQuest — 18.0
Welcome to GeneQuest
Getting Started
GeneQuest Tutorial
Part A: Apply methods to a sequence
Part B: Predict coding regions and create features
Part C: Corroborate predictions using a BLAST search
Part D: Corroborate predictions using Entrez
Create and Open Projects
Open a DNA sequence file
Open a protein file or GeneQuest project
Open a sequence from another application
Open a sequence from an online database
Specify URLS for BLAST and Entrez Searches
Open an Entrez database file by locus name or accession number
Open an Entrez database file using a text search
Entrez Search Results window
View search results in a web browser
Open results in a Lasergene application
Print search results
Copy search results
Save search results
Specify a download folder for online search results
Open a BLAST database file using a similarity search
BLAST Search Results window
Change the default application for opening Lasergene files
GeneQuest User Interface
Assay Document (main view)
Customize the look of the Assay Document
Method Curtain
Legend Curtain
Toolbar
GeneQuest Methods
Base Contents – Base Distribution
Bent DNA – Bending Index
Coding Prediction – Borodovsky
Coding Prediction – Local Compositional Complexity
Coding Prediction – Starts Stops ORFs
Enzymes – Restriction Map
Features
Gene Finding – DNA Finder
Add Sequences dialog
Gene Finding – Protein Finder
Patterns – Matrix
Patterns – Signal
Patterns – Type-In
Repeats – Direct
Repeats – Dyad
Repeats – Inverted
Ruler
Sequence
Title
Work with Methods
Change method parameters
Compare results from different methods
Compare results for the same method, but using different parameters
Apply a saved set of methods to the project
Look for Exons
Analyze Restriction Sites
Search the Sequence
View Data Tables
Annotate Features
Location tab
Description tab
Style tab
Run a Simulated Agarose Gel
View a Portion of the Sequence as Folded RNA
Print, Save and Export
Print the Assay Document
Save a sequence file or GeneQuest project
Export a sequence to another Lasergene application
Export a GeneQuest project to GenVision
Close and Exit
Appendix
Specify preferences
Choose the genetic code
Modify the genetic code
Use editing commands
Supported file types
IUPAC codes
Turn off usage logging
Troubleshoot the error “A different version is running”
Installed Lasergene file locations
Research references
Download as PDF
Appendix
Close and Exit
Specify preferences
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