If a single sequence has been selected in any view, the Details panel contains a subset of the following information:
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The label used in the Analysis view and Overview, in blue.
- Organism – The organism containing the chromosome, if available.
- Description – A description of the selected chromosome, if available.
- Sequence type – Type of sequences in the assembly (DNA or RNA).
- Nucleotides/Residues – Number of nucleotides or residues in the selected chromosome.
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| Properties |
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Note that the Properties for a sequence show information about a single assembly (not all assemblies) loaded into the session. The information here pertains to the first loaded assembly that covered the chromosome of interest.
- Accession number – The NCBI accession number of the selected sequence.
- Assembly name – The name of the assembly where the sequence or chromosome is located.
- Assembly path – The file path to that assembly.
- Assembly time – The time the SeqMan NGen assembly finished.
- Assembly type – The type of assembly performed in SeqMan NGen, if available (e.g., Exome/Gene Panel).
- Sequence shape – Linear or circular, if specified in the reference sequence.
- Sequence version – The NCBI version number (the part following the decimal after the accession number) for the sequences in the chromosome or contig.
- Template name – SeqMan NGen’s name for the assembly template, usually the same as its NCBI accession number. Example: In the image shown at left, the Template name is the accession number of the human ‘X’ chromosome.
- Template short name – May match the label displayed in the Overview or the default name originating from the Genome Template Package used to create the assembly.
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| Data |
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- Data specification – The name of the sequence file, including extension.
- Data file time – The time the sequence file was created or modified.
- Data file path – The path to the sequence file in the assembly.
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| Actions |
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