Once you have created a GenVision Pro session, the next step is to add data. GenVision Pro lets you import any combination of SeqMan NGen assemblies, BAM, VCF, and GFF files to a new session or to an existing session that already contains data.
The following table shows how to add and view different types of data.
| Data Type | User Guide Topic | Location of Uploaded Data in GenVision Pro |
|---|---|---|
| .assembly files created in SeqMan NGen | Add assemblies | Experiments section of the Explorer panel |
| BAM files (.bam) | Add BAM files | |
| VCF files (.vcf)) | Add VCF files | |
| Lasergene .seq files SeqBuilder Pro .sbd and .sbp files MegAlign Pro .msa files Reference chromosomes in .fasta, .fas, .gb, or .gbk format |
Add sequences | Chromosomes section of the Explorer panel |
| Genomes from NCBI | Add genomes from NCBI | |
| BED files (.bed) Wiggle files (.wig) GenVision box files (.txt) |
Add BED or Wiggle files | Tracks panel |
As an example, the following Experiments section image is from a GenVision Pro session containing yeast data in multiple formats and from multiple sources:
- a SeqMan NGen .assembly built using Illumina data
- a SeqMan NGen .assembly built using PacBio long-read data
- BAM files created by three different pipelines (CLC, Galaxy, and Geneious) using a set of reference sequences in GenBank format
- a GFF file
- a VCF file
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