Region capture tracks

If you created an exome or gene panel assembly in SeqMan NGen using a BED file with targeted regions, GenVision Pro lets you display a Region track in the Overview and/or Analysis view. To display the Regions track, check the associated checkboxes in the Tracks panel. There may be multiple feature and/or region tracks available under the “parent” track.

Region tracks show each region as an orange bar. You may have to adjust the horizontal zoom level to make the bars visible.

To find and navigate between regions, do either of the following:

• Use the Find tool () in the Overview or Analysis view, choose Region from the Find drop-down menu, then use the green arrows to find the next/previous region.

• Open the Enrichment Report and click on any row to navigate to that region in the Overview and Analysis view.

To view a tool tip with details about a region or feature, hover over it with the mouse. Or select one or more features or regions by clicking on them. You can then view information about them in the Details panel.

To add white space above and/or below the tracks, use the sliders in the Layout section.

To change Region capture track options:

Select a Region capture track in the Tracks panel and then click the Options tab to expand the Options section.

• By default, region capture blocks are shown in dark orange. To instead show these blocks in two alternating colors, check the Alternate color box.

• To change the main or alternate color, click on its color box and make a selection from the color chooser.