If the active selection is a PROSITE pattern or profile in the Tracks panel, the Details panel contains the following information:
Title
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The name of the PROSITE domain or site. |
Summary
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- Type – Pattern classification
- Summary – Short description
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Description
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- PROSITE ID A link to the PROSITE database.
- Pattern The PROSITE representation of the pattern defining a site. For information about conventions, see this PROSITE page Depending on availability, some or all of the following information may be displayed:
- Profile type - A matrix can represent a protein domain, repeat region, localization signal, or composition.
- Version - Database version.
- Taxon range - Kingdoms where pattern is expected: Archaea, Bacteriophages, Eukaryotes, Prokaryotes, or Viruses.
- Max repeats - Maximum number of repeats observed in at least one protein sequence.
- Matches - Number of matches.
- Best score - Profile score of best match in class with link to the match (profile type only).
- Worst score - Profile score of worst match in class with link to the match (profile type only, shown for two or more matches).
- Threshold - the threshold similarity score used to identify sequences that match a profile (profiles only).
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Actions
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Click the link to open a browser window to the relevant documentation page of the PROSITE database. |
