The Layout tab in the Assembly Options and Analysis Options dialogs is used to set parameters for the layout phase of the assembly. To access the tab from the Assembly Options or Analysis Options screens, click the Advanced Options button then click on the Layout tab. The options available in this tab may vary depending on the workflow.
Parameter | Description |
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Alignment-based layout refinement | If you are following a whole-genome workflow, checking this button may improve the accuracy of the assembly. |
Layout Stringency | Choose from the following:
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Once you are finished, click the Alignment or Trimming or Scans tabs to change those settings. Or click OK to save all changes and return to the Assembly Options screen.
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