The pairFilePattern command allows you to specify the pattern for pair files using the GREP language.

Example:

pairFilePattern
   forward: “(?‘name’.*)_R1_(?‘ext’.*)\fastq
   reverse: “(?‘name’.*)_R2_(?‘ext’.*)\fastq

Parameter Description Allowed values
forward A naming pattern to match forward clones. [text string enclosed in quotes]
reverse A naming pattern to match reverse clones. [text string enclosed in quotes]

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