The removeSmallContigs command disassembles any contigs without reference sequences that have fewer than the specified number of sequences.

Parameter Description Allowed values
minLength Specifies the minimum length of a contig to prevent it from being disassembled. Wizard equivalent (de novo, special reference-guided workflows only): Assembly Options > Minimum length. [number]

Default = 0
minSeqs (required) Specifies the minimum number of sequences necessary in a contig to prevent it from being disassembled. Wizard equivalent (de novo, special reference-guided workflows only): Assembly Options > Minimum sequences. [number]

Default = 100

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