The saveReport command exports a report as a text file that summarizes assembly statistics, including the parameters used, the number of assembled/unassembled sequences and contigs, average quality scores, and the number of sequences excluded from the assembly due to exceeding the maxAssemblyCoverage parameter of the *setParam* command.
The same information contained within this report is also saved within the SeqMan Pro project file (.sqd) regardless of whether you choose to export the report by setting this parameter. The report can be viewed in SeqMan Pro / SeqMan Ultra using the Project > Report command.
| Parameter | Description | Allowed values |
|---|---|---|
| file | (required) Specifies the directory and file name of the report to be saved. | [directory/filename enclosed in quotes] |
Example:
saveReport
file: “/Library/abc_Project/abc_report.txt”
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