If you selected Reference-guided scaffolding of existing contigs or Reference-guided scaffolding and contig joining workflow in the Workflow screen, the SeqMan NGen wizard includes a screen called Input Assembly.
Before proceeding to the next wizard screen, you must specify at least one file for the contig sequences you wish to finish (i.e. order and orient).
If your contig sequences are in .sqd format (i.e., the result of a SeqMan NGen or SeqMan Ultra assembly), use the Browse button to select the file. If the contig sequences are in any other format, or if you want to add a folder of files, use the Add or Add Folder buttons instead. You may add sequences from a variety of formats, including .fasta, .seq, .gbk, and many more.
If you need to remove a file that you have added, select it from the list and use Remove.
Press Next to proceed to the next wizard screen.
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