Pair Specifier parameters

The Pair Specifier dialog lets you choose the method for recognizing paired reads.

To access the dialog, use Project > Project Parameters. If the Pair Specifier section is not already active, click on Pair Specifier on the left.

• Choose from typical pair naming conventions in the Pair Pattern drop-down menu.
  
  
  
  If you choose Custom, you will need to enter the custom naming convention in the Forward and Reverse boxes.

• Under Paired-End Insert, enter integers for the Minimum and Maximum expected distance (in bp) between the forward and reverse paired reads.

Click OK.