Example Scripts

The following scripts are intended only as a starting point, and must be adapted, as necessary, for your particular data and goals.

If you are using the graphic user interface version of SeqNinja, you can copy the text in the Script row of each example paste into the Text view. When you switch to the Visual view, it will be populated with the example, helping guide you on which templates and options to choose for your own setup.

• Add segments of literal sequence to every sequences in a set

• Collect sequences with certain attributes into a single file

• Concatenate and de-concatenate contigs for gene finding

• Convert one version of a sequence to another

• Divide a genome into pieces of a specified length & with a specified overlap

• Extract annotated features from a genome

• Extract segments from a sequence

• Extract a specific set of genes or proteins from multiple genomes

• Insert a missing base into a sequence

• Reverse complement a sequence

• Split a multi-sequence file into individual files