The ability to map features exists in both MegAlign Pro and SeqNinja. Here are some reasons you might want to map features in one application versus the other:
| If you want to: | Use this application: | |
|---|---|---|
| MegAlign Pro | SeqNinja | |
| View the alignment and the mapped features | x | |
| Configure alignment parameters | x | |
| Map features in an end-to-end alignment. For instance, to perform a Mauve alignment of end-to-end chromosomes with some rearrangement. | x | |
| Map VCF features from a .vcf file. | x | |
| Map features into a table, then edit the table before generating the resulting sequence or feature file | x | |
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