Create a subalignment

To create a subalignment:

• MegAlign – After performing a multiple alignment, select a portion of the consensus sequence in the Worktable and use Align > Create Alignment From Selection. After choosing a name for the new project, the subalignment is opened in a new MegAlign project window.
  
  
• MegAlign Pro – After performing a multiple alignment, display a Consensus track and select a portion of the consensus sequence in the Sequence view. Then use Align > Realign Subsequences. Choose the desired alignment type and parameters, then press Align. The results are shown in the current MegAlign Pro project rather than in a new project window. For more information, see the MegAlign Pro User Guide topic Subalign sequences.